Chocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Introduction
These Chocolate Thumbprint Cookies combine a rich cocoa dough with a smooth chocolate ganache center for a delightful treat. Perfect for chocolate lovers, they are both soft and fudgy with a touch of elegance from the ganache filling.

Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Step 1: Preheat your oven to 350°F (175°C). Line two baking sheets with parchment paper and set aside.
- Step 2: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder. Set aside.
- Step 3: In a large bowl, cream the softened butter, light brown sugar, and granulated sugar with an electric mixer for about two minutes until smooth and fluffy.
- Step 4: Add the egg yolks and vanilla to the butter mixture and beat until pale and fluffy, about 1-2 minutes.
- Step 5: Gradually mix in the dry ingredients just until combined; avoid overmixing.
- Step 6: Scoop the dough into 34 portions (about 1 tablespoon each), rolling each into a ball. Place the balls on the prepared baking sheets.
- Step 7: Using a 1/4 tsp, gently press down on each ball to create an indent for the filling.
- Step 8: Chill the dough balls with indents for at least one hour. You can chill all dough together on one sheet and separate for baking later.
- Step 9: Arrange chilled dough balls about 1 1/2 inches apart on the baking sheets and bake for 9-11 minutes; 10 minutes is ideal.
- Step 10: While cookies are still warm, gently press the centers again with a 1/4 tsp to restore the indent, and run a circular cookie cutter around the edges to shape them evenly.
- Step 11: Let the cookies cool on the baking sheet for 5 minutes, then transfer to a cooling rack to cool completely.
- Step 12: To make the ganache, place chocolate chips in a small bowl. Heat the heavy cream until just about boiling, then pour over the chocolate. Let it sit for 1 minute, then stir until smooth and glossy.
- Step 13: Spoon about 1 teaspoon of ganache into each cookie indent, adding more if it fits.
- Step 14: Sprinkle nonpareils or other decorations on top if desired.
- Step 15: Chill the filled cookies in the refrigerator for 10-15 minutes to set the ganache.
Tips & Variations
- Use Dutch-process cocoa for a richer, smoother chocolate flavor.
- For extra texture, add chopped nuts to the dough or sprinkle on top of the ganache before setting.
- Vanilla bean paste adds depth over imitation vanilla extract, but both work well.
- You can substitute semi-sweet chocolate chips with dark or milk chocolate depending on your preference.
Storage
Store these cookies in an airtight container in the refrigerator for up to three days to keep the ganache fresh. Before serving, allow them to come to room temperature for the best texture. Reheating is not necessary.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I make the dough ahead of time?
Yes, the dough can be prepared and chilled for up to 24 hours before baking. This helps enhance the flavor and makes shaping easier.
What if I don’t have a cookie cutter to reshape the cookies?
If you don’t have a cookie cutter, gently pressing down with a spoon or your fingers while the cookies are warm will work fine to restore the indent and shape.
PrintChocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Delight in these rich and fudgy Chocolate Thumbprint Cookies, featuring a tender cocoa-infused dough with a luscious chocolate ganache center. Perfectly balanced with a hint of vanilla and topped with optional sprinkles for a festive touch, these cookies combine classic thumbprint style with intense chocolate flavor. Ideal for chocolate lovers seeking a homemade treat that’s both elegant and indulgent.
- Prep Time: 20 minutes
- Cook Time: 11 minutes
- Total Time: 1 hour 31 minutes
- Yield: 34 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Dry Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
Wet Ingredients
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
Ganache and Toppings
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Prepare Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, Dutch-process cocoa powder, salt, and baking powder until well combined. Set aside.
- Cream Butter and Sugars: In a large bowl, use an electric mixer to cream the softened unsalted butter with light brown sugar and granulated sugar for about two minutes until the mixture is fluffy and light.
- Add Egg Yolks and Vanilla: To the creamed butter and sugar, add the two egg yolks and vanilla bean paste or extract. Mix for 1-2 minutes until the mixture becomes pale and fluffy.
- Incorporate Dry Ingredients: Gradually add the dry ingredient mixture into the wet mixture and mix just until fully combined, being careful not to overmix to keep the dough tender.
- Form Dough Balls: Scoop the dough into approximately 34 equal portions (about 1 tablespoon each). Roll each scoop into a ball and place onto baking sheets lined with parchment paper.
- Create Indents: Using a 1/4 teaspoon, gently press down on each dough ball to create an indent. This will hold the ganache filling later.
- Chill Dough: Chill the indent-pressed dough balls in the refrigerator for at least one hour. You may chill all dough together on one sheet, then divide onto multiple sheets before baking.
- Preheat Oven: When ready to bake, preheat your oven to 350°F (175°C).
- Bake Cookies: Arrange the chilled dough balls about 1 1/2 inches apart on baking sheets. Bake in the preheated oven for 9-11 minutes, ideally 10 minutes, until cooked through.
- Refine Indents: As soon as the cookies come out of the oven, lightly press the centers again with a 1/4 teaspoon, since they may have puffed back up. Optionally, use a circular cookie or biscuit cutter to perfect the shape and reduce size while still warm.
- Cool Cookies: Allow cookies to cool on the baking sheets for 5 minutes before transferring them to a wire rack to cool completely.
- Prepare Ganache: Place the semi-sweet chocolate chips in a small bowl. Heat the heavy whipping cream until just about to boil, then pour over the chocolate chips. Let sit for 1 minute, then stir until smooth and glossy.
- Fill Cookies: Spoon approximately 1 teaspoon of the prepared ganache into the indent of each cooled cookie. Add more ganache if space allows.
- Add Toppings: Optionally sprinkle nonpareils or other decorative sprinkles on top of the ganache-filled cookies.
- Set Ganache: Chill the filled cookies in the refrigerator for 10-15 minutes so the ganache can firm up properly.
- Storage: Store leftover cookies in an airtight container at room temperature for up to three days to maintain freshness.
Notes
- For best texture, ensure butter is softened but not melted before creaming with sugar.
- Chilling the dough indents before baking helps maintain their shape in the oven.
- Dutch-process cocoa powder is recommended for a richer chocolate flavor and deeper color.
- If you don’t have vanilla bean paste, quality vanilla extract can be used instead.
- Ganache can be reheated gently if it begins to harden before assembly.
- Cookies are best enjoyed within three days to retain softness and flavor.
Keywords: chocolate thumbprint cookies, chocolate cookies, chocolate ganache cookies, homemade cookies, chocolate dessert, holiday cookies

